Run ID: SRR21700839
Sample name:
Date: 2025-03-09T15:40:50.973514
Number of reads: 6227709
Percentage reads mapped: 99.97
Median coverage: 216.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
mshA | 576179 | p.Lys278Gln | missense_variant | 1.0 | ethionamide | Uncertain significance |
isoniazid | Uncertain significance | |||||
Rv0565c | 656842 | p.Gln210Arg | missense_variant | 0.79 | ethionamide | Uncertain significance |
Rv0565c | 657391 | p.Arg27Gln | missense_variant | 0.17 | ethionamide | Uncertain significance |
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 1.0 | isoniazid | Uncertain significance |
pyrazinamide | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | amikacin | Uncertain significance |
capreomycin | Uncertain significance | |||||
kanamycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
ubiA | 4269190 | p.Ser215Asn | missense_variant | 0.8 | ethambutol | Uncertain significance |
ethA | 4326842 | p.Tyr211Cys | missense_variant | 1.0 | ethionamide | Uncertain significance |