Run ID: SRR21736942
Sample name:
Date: 04-04-2023 03:24:25
Number of reads: 3757161
Percentage reads mapped: 99.74
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474788 | n.1131G>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
pncA | 2289413 | c.-172C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338342 | p.Trp60* | stop_gained | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |