Run ID: SRR22424910
Sample name:
Date: 04-04-2023 04:16:27
Number of reads: 1200366
Percentage reads mapped: 96.26
Strain: lineage4.5
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.5 | Euro-American | H;T | RD122 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
gid | 4407896 | p.Glu103* | stop_gained | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7892 | c.591G>A | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.98 |
ccsA | 620029 | c.139C>T | synonymous_variant | 1.0 |
rpoC | 763966 | c.597C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1305372 | c.2442G>A | synonymous_variant | 1.0 |
fbiC | 1305494 | c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT | frameshift_variant&stop_lost&splice_region_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472513 | n.668T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.22 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170066 | p.Ala183Thr | missense_variant | 0.12 |
PPE35 | 2170568 | p.Ile15Met | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878575 | c.-68C>T | upstream_gene_variant | 1.0 |
clpC1 | 4038318 | p.Pro796Leu | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243490 | c.258C>A | synonymous_variant | 0.14 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
fbiC | 1305494 | c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | frameshift_variant&stop_lost&splice_region_variant | 1.0 |