TB-Profiler result

Run: SRR23071811

Summary

Run ID: SRR23071811

Sample name:

Date: 04-04-2023 04:20:43

Number of reads: 5869910

Percentage reads mapped: 99.97

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576108 p.Ala254Gly missense_variant 0.23
mshA 576482 p.Val379Leu missense_variant 0.15
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
fbiD 3339734 p.Ala206Gly missense_variant 0.24
fbiA 3640616 c.77delG frameshift_variant 1.0
panD 4043882 p.Pro134Ala missense_variant 1.0
embB 4246584 p.Arg24Pro missense_variant 0.16
panD 4043882 c.-897_399del start_lost&conservative_inframe_deletion 1.0