Run ID: SRR23071816
Sample name:
Date: 04-04-2023 04:20:55
Number of reads: 5235768
Percentage reads mapped: 99.96
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576100 | p.Asp251Glu | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
kasA | 2519079 | p.Glu322Ala | missense_variant | 0.13 |
kasA | 2519104 | c.990T>G | synonymous_variant | 0.13 |
pepQ | 2860144 | p.Val92Gly | missense_variant | 0.16 |
pepQ | 2860153 | p.Glu89Ala | missense_variant | 0.15 |
whiB7 | 3568428 | c.252A>C | synonymous_variant | 0.14 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.17 |
rpoA | 3878636 | c.-142T>G | upstream_gene_variant | 0.24 |
rpoA | 3878653 | c.-146A>C | upstream_gene_variant | 0.12 |
embC | 4240420 | c.558T>G | synonymous_variant | 0.13 |
embB | 4248309 | p.Phe599Cys | missense_variant | 0.18 |
embB | 4248319 | c.1806A>C | synonymous_variant | 0.11 |
panD | 4043882 | c.-899_399del | start_lost&conservative_inframe_deletion | 1.0 |