TB-Profiler result

Run: SRR23071985
Summary

Run ID: SRR23071985

Sample name:

Date: 04-04-2023 04:21:08

Number of reads: 9051487

Percentage reads mapped: 99.98

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
tlyA 1918255 c.319delC frameshift_variant 0.87 capreomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
mshA 576108 p.Ala254Gly missense_variant 0.22
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1918484 p.Lys182Arg missense_variant 0.16
fbiD 3339734 p.Ala206Gly missense_variant 0.26