Run ID: SRR23080997
Sample name:
Date: 04-04-2023 04:21:13
Number of reads: 5352417
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576108 | p.Ala254Gly | missense_variant | 0.27 |
mshA | 576482 | p.Val379Leu | missense_variant | 0.19 |
mmpR5 | 779269 | p.Arg94Trp | missense_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.18 |
panD | 4043882 | p.Pro134Ala | missense_variant | 1.0 |
panD | 4043882 | c.-899_399del | start_lost&conservative_inframe_deletion | 1.0 |