Run ID: SRR23082541
Sample name:
Date: 13-03-2023 19:10:27
Number of reads: 6561996
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
mshA | 576087 | p.Phe247Cys | missense_variant | 0.15 |
mshA | 576100 | p.Asp251Glu | missense_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
whiB7 | 3568427 | c.252A>C | synonymous_variant | 0.24 |
rpoA | 3878618 | c.-111A>C | upstream_gene_variant | 0.12 |
rpoA | 3878653 | c.-146A>C | upstream_gene_variant | 0.12 |
embB | 4248309 | p.Phe599Cys | missense_variant | 0.15 |
embB | 4248324 | p.Ala604Gly | missense_variant | 0.16 |
panD | 4043882 | c.-896_399del | start_lost&conservative_inframe_deletion | 1.0 |