TB-Profiler result

Run: SRR23082912
Summary

Run ID: SRR23082912

Sample name:

Date: 04-04-2023 04:21:43

Number of reads: 6168162

Percentage reads mapped: 99.97

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrl 1475926 n.2269_2270insT non_coding_transcript_exon_variant 1.0
kasA 2519079 p.Glu322Ala missense_variant 0.13
pepQ 2860144 p.Val92Gly missense_variant 0.15
pepQ 2860153 p.Glu89Ala missense_variant 0.16
whiB7 3568428 c.252A>G synonymous_variant 0.13
rpoA 3878653 c.-146A>C upstream_gene_variant 0.12
embB 4247028 p.Leu172Arg missense_variant 0.14
embB 4248309 p.Phe599Cys missense_variant 0.16
embB 4248319 c.1806A>C synonymous_variant 0.11
panD 4043882 c.-899_399del start_lost&conservative_inframe_deletion 1.0