Run ID: SRR2467266
Sample name:
Date: 04-04-2023 04:44:21
Number of reads: 4438718
Percentage reads mapped: 98.74
Strain: lineage4.1.1.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.99 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 0.99 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.96 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.94 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.99 |
fgd1 | 491290 | c.509dupT | frameshift_variant | 0.95 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 0.96 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 0.99 |
Rv1258c | 1407375 | c.-36delC | upstream_gene_variant | 0.99 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.99 |
fprA | 3473879 | c.-128T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.98 |
embC | 4242175 | c.2313G>T | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |