TB-Profiler result

Run: SRR29080975
Summary

Run ID: SRR29080975

Sample name:

Date: 2025-02-11T12:02:44.685489

Number of reads: 135536

Percentage reads mapped: 99.52

Median coverage: 4.0

Strain: lineage1.2.1.2.1;lineage4.9

Spoligotype:

Drug-resistance: Sensitive

Download CSV Download TXT Download JSON
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
lineage1.2.1.2 Indo-Oceanic RD239 0.28
lineage1 Indo-Oceanic RD239 0.29
lineage1.2.1.2.1 Indo-Oceanic RD239 0.15
lineage1.2.1 Indo-Oceanic RD239 0.44
lineage4.9 Euro-American (H37Rv-like) None 0.87
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
streptomycin
fluoroquinolones
moxifloxacin
ofloxacin
levofloxacin
ciprofloxacin
aminoglycosides
amikacin
capreomycin
kanamycin
cycloserine
ethionamide
clofazimine
para-aminosalicylic_acid
delamanid
bedaquiline
linezolid
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
PPE35 2167926 p.Leu896Ser missense_variant 1.0 pyrazinamide Not assoc w R
ald 3086788 c.-32T>C upstream_gene_variant 1.0 cycloserine
gid 4408159 p.Arg15Pro missense_variant 1.0 streptomycin Uncertain significance