TB-Profiler result

Run: SRR3675283

Summary

Run ID: SRR3675283

Sample name:

Date: 04-04-2023 05:25:41

Number of reads: 22150

Percentage reads mapped: 8.52

Strain: lineage4.9

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6727 c.-575G>T upstream_gene_variant 1.0
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 1.0
gyrA 6745 c.-557T>C upstream_gene_variant 1.0
gyrA 6754 c.-548C>T upstream_gene_variant 1.0
gyrA 6763 c.-539G>C upstream_gene_variant 1.0
gyrA 6775 c.-527G>C upstream_gene_variant 1.0
gyrA 6793 c.-509T>C upstream_gene_variant 1.0
gyrB 6798 p.Gly520Ala missense_variant 1.0
gyrA 6808 c.-494C>A upstream_gene_variant 1.0
gyrA 6811 c.-491C>T upstream_gene_variant 1.0
gyrA 6824 c.-478C>T upstream_gene_variant 1.0
gyrA 6841 c.-461T>C upstream_gene_variant 1.0
gyrA 6862 c.-440C>G upstream_gene_variant 1.0
gyrB 7051 p.Glu604Asp missense_variant 1.0
gyrA 7066 c.-236G>T upstream_gene_variant 1.0
gyrA 7081 c.-221T>C upstream_gene_variant 1.0
gyrA 7084 c.-218A>G upstream_gene_variant 1.0
gyrA 7090 c.-212C>T upstream_gene_variant 1.0
gyrA 7093 c.-209T>C upstream_gene_variant 1.0
gyrA 7100 c.-202T>C upstream_gene_variant 1.0
gyrA 7123 c.-179C>G upstream_gene_variant 1.0
gyrA 7126 c.-176G>C upstream_gene_variant 1.0
gyrA 7129 c.-173T>G upstream_gene_variant 1.0
gyrA 7132 c.-170T>C upstream_gene_variant 1.0
gyrA 7135 c.-167G>A upstream_gene_variant 1.0
gyrA 7136 c.-166T>C upstream_gene_variant 1.0
gyrA 7141 c.-161T>G upstream_gene_variant 1.0
gyrA 7144 c.-158A>G upstream_gene_variant 1.0
gyrA 7150 c.-152G>A upstream_gene_variant 1.0
gyrA 7153 c.-149G>C upstream_gene_variant 1.0
gyrA 7168 c.-134C>G upstream_gene_variant 1.0
gyrA 7178 c.-124T>C upstream_gene_variant 1.0
gyrA 7186 c.-116C>G upstream_gene_variant 1.0
gyrA 7189 c.-113C>T upstream_gene_variant 1.0
gyrA 7198 c.-104C>T upstream_gene_variant 1.0
gyrB 7210 p.Asp657Glu missense_variant 1.0
gyrA 7511 c.210C>T synonymous_variant 1.0
gyrA 7523 c.222C>G synonymous_variant 1.0
gyrA 7526 c.225G>C synonymous_variant 1.0
gyrA 7547 c.246C>T synonymous_variant 1.0
gyrA 7559 c.258G>C synonymous_variant 1.0
gyrA 7565 c.264C>T synonymous_variant 1.0
gyrA 7574 c.273G>C synonymous_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7589 c.288G>C synonymous_variant 1.0
gyrA 7595 c.294C>T synonymous_variant 1.0
gyrA 7607 c.306C>T synonymous_variant 1.0
gyrA 7637 c.336C>A synonymous_variant 1.0
gyrA 7655 c.354G>A synonymous_variant 1.0
gyrA 7658 c.357A>G synonymous_variant 1.0
gyrA 8915 c.1614A>G synonymous_variant 1.0
rpoB 760139 c.333A>G synonymous_variant 1.0
rpoB 760181 c.375T>C synonymous_variant 1.0
rpoB 760184 c.378A>G synonymous_variant 1.0
rpoB 760196 c.390C>G synonymous_variant 1.0
rpoB 760430 c.624T>C synonymous_variant 1.0
rpoB 760460 c.654G>C synonymous_variant 1.0
rpoB 760475 c.669A>G synonymous_variant 1.0
rpoB 760481 c.675G>T synonymous_variant 1.0
rpoB 760484 c.678A>G synonymous_variant 1.0
rpoB 760502 c.696C>G synonymous_variant 1.0
rpoB 760522 p.Ser239Asn missense_variant 1.0
rpoB 760532 c.726T>C synonymous_variant 1.0
rpoB 760541 c.735G>C synonymous_variant 1.0
rpoB 761555 c.1749G>C synonymous_variant 1.0
rpoB 761558 c.1752C>G synonymous_variant 1.0
rpoB 761564 c.1758G>C synonymous_variant 1.0
rpoB 761573 c.1767C>G synonymous_variant 1.0
rpoB 761579 c.1773G>C synonymous_variant 1.0
rpoB 761606 c.1800C>G synonymous_variant 1.0
rpoB 761612 c.1806G>T synonymous_variant 1.0
rpoB 761615 c.1809A>C synonymous_variant 1.0
rpoB 761636 c.1830G>T synonymous_variant 1.0
rpoB 761645 c.1839C>G synonymous_variant 1.0
rpoB 761648 c.1842T>C synonymous_variant 1.0
rpoB 761660 c.1854G>T synonymous_variant 1.0
rpoB 761669 c.1863C>T synonymous_variant 1.0
rpoB 761675 c.1869G>C synonymous_variant 1.0
rpoB 761687 c.1881C>T synonymous_variant 1.0
rpoB 761690 c.1884G>C synonymous_variant 1.0
rpoB 761693 c.1887G>C synonymous_variant 1.0
rpoB 761705 c.1899C>A synonymous_variant 1.0
rpoB 762176 c.2370T>C synonymous_variant 1.0
rpoB 762185 c.2379G>C synonymous_variant 1.0
rpoB 762194 c.2388G>C synonymous_variant 1.0
rpoB 762233 c.2427G>C synonymous_variant 1.0
rpoB 762236 c.2430G>C synonymous_variant 1.0
rpoB 762239 c.2433G>A synonymous_variant 1.0
rpoB 762245 c.2439G>C synonymous_variant 1.0
rpoB 762254 c.2448T>C synonymous_variant 1.0
rpoB 762275 c.2469C>T synonymous_variant 1.0
rpoB 762284 c.2478G>C synonymous_variant 1.0
rpoB 762293 c.2487T>C synonymous_variant 1.0
rpoB 762296 c.2490G>C synonymous_variant 1.0
rpoB 762314 c.2508C>T synonymous_variant 1.0
rpoB 762317 c.2511A>G synonymous_variant 1.0
rpoB 762323 c.2517C>A synonymous_variant 1.0
rpoB 762329 c.2523G>C synonymous_variant 1.0
rpoB 762338 c.2532T>C synonymous_variant 1.0
rpoB 762341 c.2535G>C synonymous_variant 1.0
rpoB 762347 c.2541T>C synonymous_variant 1.0
rpoB 762350 c.2544C>G synonymous_variant 1.0
rpoB 762353 c.2547C>T synonymous_variant 1.0
rpoB 762356 p.Glu850Asp missense_variant 1.0
rpoB 762362 p.Glu852Asp missense_variant 1.0
rpoB 762368 p.Glu854Asp missense_variant 1.0
rpoB 762369 c.2563T>C synonymous_variant 1.0
rpoC 762374 c.-996G>T upstream_gene_variant 1.0
rpoC 762380 c.-990T>C upstream_gene_variant 1.0
rpoC 762383 c.-987C>G upstream_gene_variant 1.0
rpoC 762392 c.-978G>C upstream_gene_variant 1.0
rpoC 762395 c.-975G>T upstream_gene_variant 1.0
rpoC 762398 c.-972T>C upstream_gene_variant 1.0
rpoC 762404 c.-966T>C upstream_gene_variant 1.0
rpoC 762410 c.-960T>G upstream_gene_variant 1.0
rpoC 762416 c.-954A>G upstream_gene_variant 1.0
rpoC 763031 c.-339T>G upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 1.0
rpoC 763040 c.-330C>G upstream_gene_variant 1.0
rpoC 763070 c.-300T>C upstream_gene_variant 1.0
rpoC 763082 c.-288C>T upstream_gene_variant 1.0
rpoC 763088 c.-282C>G upstream_gene_variant 1.0
rpoC 763094 c.-276G>C upstream_gene_variant 1.0
rpoC 763115 c.-255T>C upstream_gene_variant 1.0
rpoC 763127 c.-243G>C upstream_gene_variant 1.0
rpoC 763136 c.-234C>T upstream_gene_variant 1.0
rpoC 763145 c.-225G>A upstream_gene_variant 1.0
rpoC 763157 c.-213G>T upstream_gene_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763172 c.-198G>C upstream_gene_variant 1.0
rpoC 763435 p.Gln22His missense_variant 1.0
rpoC 763443 p.Tyr25Phe missense_variant 1.0
rpoC 763450 c.81G>A synonymous_variant 1.0
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763468 c.99G>C synonymous_variant 1.0
rpoC 763486 c.117T>C synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 764575 c.1206T>G synonymous_variant 1.0
rpoC 764593 c.1224C>T synonymous_variant 1.0
rpoC 764611 c.1242G>T synonymous_variant 1.0
rpoC 764626 c.1257C>T synonymous_variant 1.0
rpoC 764632 c.1263T>C synonymous_variant 1.0
rpoC 764650 c.1281G>T synonymous_variant 1.0
rpoC 764668 c.1299C>T synonymous_variant 1.0
rpoC 764683 c.1314G>A synonymous_variant 1.0
rpoC 764692 c.1323C>T synonymous_variant 1.0
rpoC 764713 c.1344G>T synonymous_variant 1.0
rpoC 764716 c.1347G>C synonymous_variant 1.0
rpoC 764746 c.1377G>T synonymous_variant 1.0
rpoC 764752 c.1383G>C synonymous_variant 1.0
rpoC 764758 c.1389C>G synonymous_variant 1.0
rpoC 764764 c.1395T>C synonymous_variant 1.0
rpoC 764791 c.1422C>G synonymous_variant 1.0
rpoC 764803 c.1434C>T synonymous_variant 1.0
rpoC 764809 c.1440C>T synonymous_variant 1.0
rpoC 764810 p.Pro481Ala missense_variant 1.0
rpoC 764815 c.1446A>G synonymous_variant 1.0
rpoC 764824 c.1455T>C synonymous_variant 1.0
rpoC 764827 c.1458G>C synonymous_variant 1.0
rpoC 764858 c.1489T>C synonymous_variant 1.0
rpoC 764869 c.1500C>T synonymous_variant 1.0
rpoC 764875 c.1506C>A synonymous_variant 1.0
rpoC 764887 c.1518G>C synonymous_variant 1.0
rpoC 764888 c.1519T>C synonymous_variant 1.0
rpoC 765300 p.Val644Ala missense_variant 1.0
rpoC 765305 p.Ile646Val missense_variant 1.0
rpoC 765319 c.1950A>G synonymous_variant 1.0
rpoC 765323 c.1955_1957delGCC disruptive_inframe_deletion 1.0
rpoC 765328 p.His653Gln missense_variant 1.0
rpoC 765330 p.Ser654Asn missense_variant 1.0
rpoC 765334 c.1965C>T synonymous_variant 1.0
rpoC 765343 c.1974G>A synonymous_variant 1.0
rpoC 765352 c.1983G>C synonymous_variant 1.0
rpoC 765356 p.Met663Val missense_variant 1.0
rpoC 765370 c.2001G>A synonymous_variant 1.0
rpoC 765379 c.2010G>C synonymous_variant 1.0
rpoC 765382 c.2013G>T synonymous_variant 1.0
rpoC 765383 p.Met672Leu missense_variant 1.0
rpoC 765403 c.2034G>C synonymous_variant 1.0
rpoC 765405 p.Leu679His missense_variant 1.0
rpoC 765409 c.2040T>G synonymous_variant 1.0
rpoC 765421 c.2052C>G synonymous_variant 1.0
rpoC 765449 p.Ala694Ser missense_variant 1.0
rpoC 765454 c.2085C>G synonymous_variant 1.0
rpoC 765469 c.2100G>C synonymous_variant 1.0
rpoC 765478 c.2109T>G synonymous_variant 1.0
rpoC 765480 p.Tyr704Phe missense_variant 1.0
rpoC 765499 c.2130C>G synonymous_variant 1.0
rpoC 765907 c.2538G>T synonymous_variant 1.0
rpoC 765910 c.2541G>C synonymous_variant 1.0
rpoC 765928 c.2559C>G synonymous_variant 1.0
rpoC 765940 c.2571A>T synonymous_variant 1.0
rpoC 765947 c.2578T>C synonymous_variant 1.0
rpoC 765962 c.2593_2595delTTGinsCTT synonymous_variant 1.0
rpoC 765967 c.2598C>T synonymous_variant 1.0
rpoC 765973 c.2604C>G synonymous_variant 1.0
rpoC 765979 c.2610C>G synonymous_variant 1.0
rpoC 765982 c.2613C>T synonymous_variant 1.0
rpoC 765994 c.2625A>T synonymous_variant 1.0
rpoC 766003 c.2634G>C synonymous_variant 1.0
rpoC 767080 c.3711G>C synonymous_variant 1.0
rpoC 767098 c.3729T>C synonymous_variant 1.0
rpoC 767104 c.3735C>G synonymous_variant 1.0
rpoC 767107 c.3738C>T synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767125 c.3756G>C synonymous_variant 1.0
rpoC 767134 c.3765C>T synonymous_variant 1.0
rpoC 767138 c.3769C>T synonymous_variant 1.0
rpoC 767149 c.3780C>T synonymous_variant 1.0
rpoC 767158 c.3789T>C synonymous_variant 1.0
rpoC 767180 p.Ala1271Ser missense_variant 1.0
rpoC 767191 c.3822C>G synonymous_variant 1.0
rpoC 767197 c.3828G>A synonymous_variant 1.0
rpoC 767203 c.3834C>G synonymous_variant 1.0
rpoC 767206 c.3837C>G synonymous_variant 1.0
rpoC 767209 c.3840T>C synonymous_variant 1.0
rpoC 767212 c.3843G>C synonymous_variant 1.0
rpoC 767221 c.3852C>G synonymous_variant 1.0
rpoC 767230 c.3861G>C synonymous_variant 1.0
rpoC 767233 c.3864T>C synonymous_variant 1.0
rpsL 781706 c.147T>C synonymous_variant 1.0
rpsL 781802 c.243G>C synonymous_variant 1.0
rpsL 781814 c.255C>T synonymous_variant 1.0
rpsL 781817 c.258G>T synonymous_variant 1.0
rpsL 781829 c.270G>C synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rpsL 781859 c.300T>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781877 c.318T>A synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rpsL 781907 c.348T>C synonymous_variant 1.0
rpsL 781916 c.357T>C synonymous_variant 1.0
rpsL 781929 p.Gly124Ser missense_variant 1.0
rplC 800856 c.48A>G synonymous_variant 1.0
rplC 800865 p.Glu19Asp missense_variant 1.0
rplC 800867 p.Ser20Asn missense_variant 1.0
fbiC 1304613 c.1683T>C synonymous_variant 1.0
fbiC 1304634 c.1704C>G synonymous_variant 1.0
atpE 1461197 c.153A>C synonymous_variant 1.0
rrs 1471922 n.78delT non_coding_transcript_exon_variant 1.0
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 1.0
rrs 1471931 n.87delA non_coding_transcript_exon_variant 1.0
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 1.0
rrs 1471985 n.140T>C non_coding_transcript_exon_variant 1.0
rrs 1471986 n.141C>T non_coding_transcript_exon_variant 1.0
rrs 1472030 n.185G>A non_coding_transcript_exon_variant 1.0
rrs 1472031 n.186G>C non_coding_transcript_exon_variant 1.0
rrs 1472032 n.187G>A non_coding_transcript_exon_variant 1.0
rrs 1472033 n.188A>C non_coding_transcript_exon_variant 1.0
rrs 1472035 n.190G>T non_coding_transcript_exon_variant 1.0
rrs 1472040 n.195T>G non_coding_transcript_exon_variant 1.0
rrs 1472041 n.196C>T non_coding_transcript_exon_variant 1.0
rrs 1472042 n.197T>G non_coding_transcript_exon_variant 1.0
rrs 1472043 n.198T>A non_coding_transcript_exon_variant 1.0
rrs 1472050 n.205G>C non_coding_transcript_exon_variant 1.0
rrs 1472053 n.211_212delGC non_coding_transcript_exon_variant 1.0
rrs 1472061 n.216A>T non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 1.0
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 1.0
rrs 1472380 n.535G>C non_coding_transcript_exon_variant 1.0
rrs 1472446 n.601T>A non_coding_transcript_exon_variant 1.0
rrs 1472452 n.607G>A non_coding_transcript_exon_variant 0.86
rrs 1472464 n.619A>G non_coding_transcript_exon_variant 1.0
rrs 1472612 n.767G>T non_coding_transcript_exon_variant 1.0
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 1.0
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 1.0
rrs 1472846 n.1001C>T non_coding_transcript_exon_variant 1.0
rrs 1472847 n.1002G>A non_coding_transcript_exon_variant 1.0
rrs 1472848 n.1003T>C non_coding_transcript_exon_variant 1.0
rrs 1472860 n.1015C>T non_coding_transcript_exon_variant 1.0
rrs 1472861 n.1016G>A non_coding_transcript_exon_variant 1.0
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 1.0
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 1.0
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 1.0
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 1.0
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 1.0
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 1.0
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1473082 n.1237G>A non_coding_transcript_exon_variant 1.0
rrs 1473088 n.1243A>G non_coding_transcript_exon_variant 1.0
rrs 1473099 n.1254T>A non_coding_transcript_exon_variant 1.0
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 1.0
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 1.0
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 1.0
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 1.0
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 1.0
rrs 1473123 n.1278A>T non_coding_transcript_exon_variant 1.0
rrs 1473129 n.1284C>T non_coding_transcript_exon_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 1.0
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 1.0
rrs 1473288 n.1443C>T non_coding_transcript_exon_variant 1.0
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrs 1473291 n.1446G>T non_coding_transcript_exon_variant 1.0
rrl 1473684 n.27G>A non_coding_transcript_exon_variant 1.0
rrl 1473699 n.43delG non_coding_transcript_exon_variant 1.0
rrl 1473707 n.50T>A non_coding_transcript_exon_variant 1.0
rrl 1473717 n.60G>A non_coding_transcript_exon_variant 1.0
rrl 1473731 n.74T>A non_coding_transcript_exon_variant 1.0
rrl 1473746 n.89T>C non_coding_transcript_exon_variant 1.0
rrl 1473756 n.99G>T non_coding_transcript_exon_variant 1.0
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 1.0
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473812 n.155G>A non_coding_transcript_exon_variant 1.0
rrl 1473814 n.157A>T non_coding_transcript_exon_variant 1.0
rrl 1473815 n.158T>G non_coding_transcript_exon_variant 1.0
rrl 1473829 n.172G>C non_coding_transcript_exon_variant 1.0
rrl 1473831 n.174G>T non_coding_transcript_exon_variant 1.0
rrl 1473832 n.175C>T non_coding_transcript_exon_variant 1.0
rrl 1473839 n.182G>A non_coding_transcript_exon_variant 1.0
rrl 1473876 n.219G>A non_coding_transcript_exon_variant 1.0
rrl 1473887 n.230T>C non_coding_transcript_exon_variant 1.0
rrl 1473888 n.231T>C non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 1.0
rrl 1473899 n.242A>G non_coding_transcript_exon_variant 1.0
rrl 1473916 n.259C>A non_coding_transcript_exon_variant 1.0
rrl 1473923 n.266C>G non_coding_transcript_exon_variant 1.0
rrl 1473924 n.267_268insT non_coding_transcript_exon_variant 1.0
rrl 1473937 n.280C>T non_coding_transcript_exon_variant 1.0
rrl 1473943 n.286G>T non_coding_transcript_exon_variant 1.0
rrl 1473945 n.288T>A non_coding_transcript_exon_variant 1.0
rrl 1473946 n.289A>T non_coding_transcript_exon_variant 1.0
rrl 1473950 n.293G>T non_coding_transcript_exon_variant 1.0
rrl 1474061 n.404T>C non_coding_transcript_exon_variant 1.0
rrl 1474074 n.417C>T non_coding_transcript_exon_variant 1.0
rrl 1474089 n.432C>T non_coding_transcript_exon_variant 1.0
rrl 1474093 n.436G>A non_coding_transcript_exon_variant 1.0
rrl 1474100 n.443C>T non_coding_transcript_exon_variant 1.0
rrl 1474103 n.446A>C non_coding_transcript_exon_variant 1.0
rrl 1474106 n.449_450insCT non_coding_transcript_exon_variant 1.0
rrl 1474109 n.453_454delAT non_coding_transcript_exon_variant 1.0
rrl 1474130 n.473C>T non_coding_transcript_exon_variant 1.0
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 1.0
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474181 n.524_525insT non_coding_transcript_exon_variant 1.0
rrl 1474184 n.527C>A non_coding_transcript_exon_variant 1.0
rrl 1474185 n.529delA non_coding_transcript_exon_variant 1.0
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 1.0
rrl 1474263 n.606G>A non_coding_transcript_exon_variant 1.0
rrl 1474282 n.625G>A non_coding_transcript_exon_variant 1.0
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 1.0
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 1.0
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 1.0
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474496 n.839C>G non_coding_transcript_exon_variant 1.0
rrl 1474497 n.840G>C non_coding_transcript_exon_variant 1.0
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 1.0
rrl 1474717 n.1060A>G non_coding_transcript_exon_variant 1.0
rrl 1474722 n.1065T>C non_coding_transcript_exon_variant 1.0
rrl 1474743 n.1086T>G non_coding_transcript_exon_variant 1.0
rrl 1474760 n.1103A>G non_coding_transcript_exon_variant 1.0
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 1.0
rrl 1474803 n.1146G>A non_coding_transcript_exon_variant 1.0
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 1.0
rrl 1474830 n.1173A>G non_coding_transcript_exon_variant 1.0
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 1.0
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 1.0
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 1.0
rrl 1475443 n.1786G>A non_coding_transcript_exon_variant 1.0
rrl 1475452 n.1795C>A non_coding_transcript_exon_variant 1.0
rrl 1475475 n.1818C>T non_coding_transcript_exon_variant 1.0
rrl 1475479 n.1822C>T non_coding_transcript_exon_variant 1.0
rrl 1475480 n.1823A>T non_coding_transcript_exon_variant 1.0
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475531 n.1874C>T non_coding_transcript_exon_variant 1.0
rrl 1475573 n.1916G>A non_coding_transcript_exon_variant 1.0
rrl 1475760 n.2105_2106delGC non_coding_transcript_exon_variant 1.0
rrl 1475764 n.2107A>T non_coding_transcript_exon_variant 1.0
rrl 1475765 n.2108A>T non_coding_transcript_exon_variant 1.0
rrl 1476085 n.2428G>A non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 1.0
rrl 1476088 n.2431A>C non_coding_transcript_exon_variant 1.0
rrl 1476099 n.2442A>G non_coding_transcript_exon_variant 1.0
rrl 1476103 n.2446C>G non_coding_transcript_exon_variant 1.0
rrl 1476105 n.2448G>A non_coding_transcript_exon_variant 1.0
rrl 1476106 n.2449A>T non_coding_transcript_exon_variant 1.0
rrl 1476110 n.2453G>C non_coding_transcript_exon_variant 1.0
rrl 1476114 n.2457T>C non_coding_transcript_exon_variant 1.0
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 1.0
rrl 1476131 n.2474C>T non_coding_transcript_exon_variant 1.0
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 1.0
rrl 1476215 n.2558C>T non_coding_transcript_exon_variant 1.0
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476251 n.2594T>C non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476297 n.2640C>T non_coding_transcript_exon_variant 1.0
rrl 1476299 n.2642C>T non_coding_transcript_exon_variant 1.0
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 1.0
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 1.0
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 1.0
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 1.0
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 1.0
rrl 1476619 n.2962C>T non_coding_transcript_exon_variant 1.0
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 1.0
rpsA 1833709 c.168C>T synonymous_variant 1.0
rpsA 1833724 c.183C>T synonymous_variant 1.0
rpsA 1833727 c.186G>C synonymous_variant 1.0
rpsA 1833733 c.192C>G synonymous_variant 1.0
rpsA 1833734 p.Ala65Ser missense_variant 1.0
rpsA 1833742 c.201A>G synonymous_variant 1.0
rpsA 1833745 c.204G>C synonymous_variant 1.0
rpsA 1833748 c.207C>G synonymous_variant 1.0
rpsA 1833760 c.219C>T synonymous_variant 1.0
rpsA 1833787 c.246C>G synonymous_variant 1.0
rpsA 1833790 c.249T>C synonymous_variant 1.0
rpsA 1833802 c.261A>G synonymous_variant 1.0
rpsA 1833811 c.270G>T synonymous_variant 1.0
rpsA 1833823 c.282G>A synonymous_variant 1.0
rpsA 1833832 c.291G>A synonymous_variant 1.0
rpsA 1833835 c.294C>T synonymous_variant 1.0
rpsA 1833838 c.297G>C synonymous_variant 1.0
rpsA 1833841 c.300C>G synonymous_variant 1.0
rpsA 1833847 c.306C>G synonymous_variant 1.0
rpsA 1833862 c.321G>T synonymous_variant 1.0
rpsA 1833874 c.333T>G synonymous_variant 1.0
rpsA 1833877 c.336C>G synonymous_variant 1.0
rpsA 1833886 c.345C>G synonymous_variant 1.0
rpsA 1833894 p.Ala118Glu missense_variant 1.0
rpsA 1833961 c.420C>G synonymous_variant 1.0
rpsA 1833970 c.429G>T synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1833991 c.450C>G synonymous_variant 1.0
rpsA 1834000 c.459G>C synonymous_variant 1.0
rpsA 1834009 c.468C>T synonymous_variant 1.0
rpsA 1834012 c.471G>C synonymous_variant 1.0
rpsA 1834015 c.474G>C synonymous_variant 1.0
rpsA 1834021 c.480C>T synonymous_variant 1.0
rpsA 1834030 c.489C>G synonymous_variant 1.0
rpsA 1834073 p.Lys178Arg missense_variant 1.0
rpsA 1834096 c.555G>C synonymous_variant 1.0
rpsA 1834099 c.558C>G synonymous_variant 1.0
rpsA 1834108 c.567C>G synonymous_variant 1.0
rpsA 1834228 c.687C>A synonymous_variant 1.0
rpsA 1834231 c.690T>G synonymous_variant 1.0
rpsA 1834234 c.693G>T synonymous_variant 1.0
rpsA 1834240 c.699T>C synonymous_variant 1.0
rpsA 1834246 c.705G>T synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834252 c.711C>G synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 1.0
rpsA 1834264 c.723G>C synonymous_variant 1.0
rpsA 1834279 c.738C>T synonymous_variant 1.0
rpsA 1834294 c.753G>T synonymous_variant 1.0
rpsA 1834297 c.756C>T synonymous_variant 1.0
rpsA 1834303 c.762T>G synonymous_variant 1.0
rpsA 1834306 c.765T>C synonymous_variant 1.0
rpsA 1834327 c.786G>T synonymous_variant 1.0
rpsA 1834348 c.807T>C synonymous_variant 1.0
rpsA 1834357 c.816T>C synonymous_variant 1.0
rpsA 1834366 c.825A>G synonymous_variant 1.0
rpsA 1834375 c.834G>C synonymous_variant 1.0
rpsA 1834690 c.1149T>C synonymous_variant 1.0
rpsA 1834700 p.Gln387Ala missense_variant 1.0
rpsA 1834705 c.1164C>G synonymous_variant 1.0
rpsA 1834720 c.1179C>G synonymous_variant 1.0
rpsA 1834732 c.1191T>C synonymous_variant 1.0
rpsA 1834738 c.1197A>G synonymous_variant 1.0
rpsA 1834747 c.1206A>G synonymous_variant 1.0
rpsA 1834759 c.1218A>C synonymous_variant 1.0
rpsA 1834765 p.Glu408Asp missense_variant 1.0
rpsA 1834774 c.1233C>T synonymous_variant 1.0
rpsA 1834776 p.Ala412Glu missense_variant 1.0
rpsA 1834780 c.1239A>G synonymous_variant 1.0
rpsA 1834789 c.1248T>C synonymous_variant 1.0
rpsA 1834813 c.1272G>T synonymous_variant 1.0
kasA 2517917 c.-198G>C upstream_gene_variant 1.0
kasA 2517941 c.-174C>G upstream_gene_variant 1.0
kasA 2517953 c.-162C>T upstream_gene_variant 1.0
kasA 2517959 c.-156C>T upstream_gene_variant 1.0
kasA 2517962 c.-153C>G upstream_gene_variant 1.0
rpoA 3877571 p.Pro313Thr missense_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 1.0
rpoA 3877593 c.915C>T synonymous_variant 1.0
rpoA 3877614 c.894G>A synonymous_variant 1.0
rpoA 3877620 c.888G>A synonymous_variant 1.0
rpoA 3877638 c.870T>C synonymous_variant 1.0
rpoA 3877656 c.852T>G synonymous_variant 1.0
rpoA 3877665 c.843C>G synonymous_variant 1.0
rpoA 3877677 c.831G>C synonymous_variant 1.0
rpoA 3877680 c.828G>C synonymous_variant 1.0
rpoA 3877686 c.822A>G synonymous_variant 1.0
rpoA 3877692 c.816G>C synonymous_variant 1.0
rpoA 3877704 c.804G>T synonymous_variant 1.0
clpC1 4038737 c.1968C>T synonymous_variant 0.75
clpC1 4038740 c.1965G>C synonymous_variant 0.75
clpC1 4038749 c.1956C>A synonymous_variant 1.0
clpC1 4038755 c.1950G>C synonymous_variant 1.0
clpC1 4038758 c.1947C>T synonymous_variant 1.0
clpC1 4038767 c.1938G>T synonymous_variant 1.0
clpC1 4038770 c.1935C>T synonymous_variant 1.0
clpC1 4038773 c.1932T>C synonymous_variant 1.0
clpC1 4038782 c.1923G>T synonymous_variant 1.0
clpC1 4038790 c.1915C>T synonymous_variant 1.0
clpC1 4038795 p.Ser637Thr missense_variant 1.0
clpC1 4038812 c.1893T>C synonymous_variant 1.0
clpC1 4038815 c.1890G>T synonymous_variant 1.0
clpC1 4038842 c.1863G>C synonymous_variant 1.0
clpC1 4038845 c.1858_1860delTCGinsAGC synonymous_variant 1.0
clpC1 4038860 c.1845G>T synonymous_variant 1.0
clpC1 4038989 c.1716T>C synonymous_variant 1.0
clpC1 4038997 c.1708T>C synonymous_variant 1.0
clpC1 4039022 c.1683A>G synonymous_variant 1.0
clpC1 4039121 c.1584T>C synonymous_variant 1.0
clpC1 4039178 c.1527G>C synonymous_variant 1.0
clpC1 4039183 c.1522T>C synonymous_variant 1.0
clpC1 4039190 c.1515C>T synonymous_variant 1.0
clpC1 4039196 c.1509G>A synonymous_variant 1.0
clpC1 4039199 p.Ala502Glu missense_variant 1.0
clpC1 4039208 c.1497C>G synonymous_variant 1.0
clpC1 4039220 c.1485G>C synonymous_variant 1.0
clpC1 4039262 c.1443C>T synonymous_variant 1.0
clpC1 4039265 c.1440C>T synonymous_variant 1.0
clpC1 4039271 c.1434G>A synonymous_variant 1.0
clpC1 4039283 c.1422C>T synonymous_variant 1.0
clpC1 4039286 c.1417_1419delCTTinsTTA synonymous_variant 1.0
clpC1 4039289 c.1416T>C synonymous_variant 1.0
clpC1 4039292 c.1413C>T synonymous_variant 1.0
clpC1 4039304 c.1401G>A synonymous_variant 1.0
clpC1 4039316 p.Glu463Asp missense_variant 1.0
clpC1 4039319 c.1386T>C synonymous_variant 1.0
clpC1 4039328 c.1377A>G synonymous_variant 1.0
clpC1 4039331 c.1374C>G synonymous_variant 1.0
clpC1 4039337 p.Thr456Gln missense_variant 1.0
clpC1 4039347 p.Arg453Ser missense_variant 1.0
clpC1 4039360 p.Ser449Arg missense_variant 1.0
clpC1 4039361 c.1344C>G synonymous_variant 1.0
clpC1 4039454 c.1251A>T synonymous_variant 1.0
clpC1 4039466 c.1239T>C synonymous_variant 1.0
clpC1 4039469 c.1236T>C synonymous_variant 1.0
clpC1 4039472 c.1233G>C synonymous_variant 1.0
clpC1 4039478 c.1227G>C synonymous_variant 1.0
clpC1 4039481 c.1224T>C synonymous_variant 1.0
clpC1 4039487 c.1218G>C synonymous_variant 1.0
clpC1 4039522 c.1183C>T synonymous_variant 1.0
clpC1 4039528 c.1177C>A synonymous_variant 1.0
clpC1 4039541 c.1164C>G synonymous_variant 1.0
clpC1 4039544 c.1161C>T synonymous_variant 1.0
clpC1 4039556 c.1149G>C synonymous_variant 1.0
clpC1 4039559 c.1146C>G synonymous_variant 1.0
clpC1 4039565 c.1140G>T synonymous_variant 1.0
clpC1 4039570 p.Met379Leu missense_variant 1.0
clpC1 4039574 p.Ala377Gly missense_variant 1.0
clpC1 4039586 c.1119G>C synonymous_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039622 c.1083C>T synonymous_variant 1.0
clpC1 4039649 c.1056G>C synonymous_variant 1.0
clpC1 4039661 c.1044T>C synonymous_variant 1.0
clpC1 4039682 c.1023C>G synonymous_variant 1.0
clpC1 4039694 c.1011G>C synonymous_variant 1.0
clpC1 4039724 c.981A>G synonymous_variant 1.0
clpC1 4039733 c.972G>T synonymous_variant 1.0
clpC1 4039739 c.966C>G synonymous_variant 1.0
clpC1 4039742 c.963C>T synonymous_variant 1.0
clpC1 4039748 c.957G>C synonymous_variant 1.0
clpC1 4039751 c.954A>G synonymous_variant 1.0
clpC1 4039757 c.948A>G synonymous_variant 1.0
clpC1 4039760 c.945T>C synonymous_variant 1.0
clpC1 4039763 c.942C>T synonymous_variant 1.0
clpC1 4039769 c.936C>G synonymous_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039793 c.912C>G synonymous_variant 1.0
clpC1 4039814 c.891C>G synonymous_variant 1.0
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>G synonymous_variant 1.0
clpC1 4039826 c.879C>G synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039832 c.873C>G synonymous_variant 1.0
clpC1 4039850 c.855T>C synonymous_variant 1.0
clpC1 4039868 c.837C>T synonymous_variant 1.0
clpC1 4039913 c.792C>T synonymous_variant 1.0
clpC1 4039931 c.774T>C synonymous_variant 1.0
clpC1 4039934 c.771G>C synonymous_variant 1.0
clpC1 4040048 c.657C>T synonymous_variant 1.0
clpC1 4040087 c.618G>C synonymous_variant 1.0
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 1.0
clpC1 4040093 c.612C>G synonymous_variant 1.0
clpC1 4040126 c.579C>T synonymous_variant 1.0
clpC1 4040141 c.564C>T synonymous_variant 1.0
clpC1 4040144 c.561G>C synonymous_variant 1.0
clpC1 4040147 c.558A>G synonymous_variant 1.0
clpC1 4040153 c.552A>G synonymous_variant 1.0
clpC1 4040159 c.546G>C synonymous_variant 1.0
clpC1 4040387 c.318A>G synonymous_variant 1.0
clpC1 4040393 c.312G>C synonymous_variant 1.0
clpC1 4040411 c.294T>C synonymous_variant 1.0
clpC1 4040423 c.282A>G synonymous_variant 1.0
clpC1 4040426 c.279T>C synonymous_variant 1.0
clpC1 4040431 c.274T>C synonymous_variant 1.0
clpC1 4040441 c.264C>G synonymous_variant 1.0
clpC1 4040444 c.261C>G synonymous_variant 1.0
clpC1 4040450 c.255A>G synonymous_variant 1.0
clpC1 4040456 c.249C>T synonymous_variant 1.0
clpC1 4040459 c.246C>G synonymous_variant 1.0
clpC1 4040462 c.243C>T synonymous_variant 1.0
clpC1 4040465 c.240T>C synonymous_variant 1.0
clpC1 4040480 c.225T>C synonymous_variant 1.0
clpC1 4040495 c.210C>T synonymous_variant 1.0
clpC1 4040522 c.183T>C synonymous_variant 1.0
clpC1 4040531 c.174T>G synonymous_variant 1.0
clpC1 4040540 c.165G>T synonymous_variant 1.0
clpC1 4040546 c.159G>C synonymous_variant 1.0
clpC1 4040558 c.147G>C synonymous_variant 1.0
clpC1 4040561 c.144A>G synonymous_variant 1.0
clpC1 4040579 c.126A>G synonymous_variant 1.0
clpC1 4040582 c.123G>C synonymous_variant 1.0
clpC1 4040585 c.120A>G synonymous_variant 1.0
clpC1 4040597 c.108C>T synonymous_variant 1.0
clpC1 4040600 c.103_105delTTAinsCTG synonymous_variant 1.0
clpC1 4040603 c.102T>G synonymous_variant 1.0
clpC1 4040606 c.99T>C synonymous_variant 1.0
embC 4241104 c.1242G>A synonymous_variant 1.0
embC 4241108 p.Ala416Ser missense_variant 1.0
embC 4241111 p.Val417Ile missense_variant 1.0
embC 4241121 p.Ser420Asn missense_variant 1.0
embC 4241134 c.1272G>T synonymous_variant 1.0
embC 4241136 p.Val425Ala missense_variant 1.0
embC 4241140 c.1278A>C synonymous_variant 1.0
embC 4241141 p.Ile427Ala missense_variant 1.0
embC 4241158 c.1296T>C synonymous_variant 1.0
embC 4241161 c.1299C>G synonymous_variant 1.0
embC 4241162 c.1300_1302delTTGinsCTC synonymous_variant 1.0
embC 4241168 c.1306C>T synonymous_variant 1.0
embC 4241179 c.1317G>C synonymous_variant 1.0
embC 4241182 c.1320G>C synonymous_variant 1.0
embC 4241185 c.1323G>C synonymous_variant 1.0
embC 4241188 c.1326C>T synonymous_variant 1.0
embC 4241194 c.1332C>G synonymous_variant 1.0
embC 4241197 c.1335G>C synonymous_variant 1.0
embC 4241203 c.1341T>C synonymous_variant 1.0