Run ID: SRR3675476
Sample name:
Date: 04-04-2023 05:29:16
Number of reads: 260444
Percentage reads mapped: 99.03
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
tlyA | 1918647 | p.Asn236Lys | missense_variant | 1.0 | capreomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5086 | c.-154A>C | upstream_gene_variant | 0.18 |
gyrB | 7144 | p.Gln635His | missense_variant | 0.33 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575315 | c.-33G>A | upstream_gene_variant | 0.8 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.38 |
rpoC | 763178 | c.-192G>A | upstream_gene_variant | 0.29 |
rpoC | 764808 | p.Arg480His | missense_variant | 0.29 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777974 | c.507C>T | synonymous_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416324 | p.Asn342Tyr | missense_variant | 0.17 |
embR | 1417202 | p.Pro49His | missense_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473963 | n.306G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476483 | n.2826G>T | non_coding_transcript_exon_variant | 0.11 |
inhA | 1674222 | c.21C>T | synonymous_variant | 0.25 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154254 | p.Ser620Cys | missense_variant | 0.33 |
PPE35 | 2167814 | c.2799C>T | synonymous_variant | 0.2 |
PPE35 | 2169125 | p.Val496Ile | missense_variant | 0.16 |
PPE35 | 2169278 | c.1335T>C | synonymous_variant | 0.25 |
PPE35 | 2169281 | c.1332T>G | synonymous_variant | 0.25 |
PPE35 | 2169287 | c.1326T>C | synonymous_variant | 0.22 |
PPE35 | 2169890 | c.723C>T | synonymous_variant | 0.18 |
PPE35 | 2169893 | c.720C>A | synonymous_variant | 0.18 |
PPE35 | 2169902 | p.Leu237Phe | missense_variant | 0.21 |
PPE35 | 2169910 | p.Asn235Tyr | missense_variant | 0.14 |
PPE35 | 2170357 | p.Ala86Ser | missense_variant | 0.33 |
PPE35 | 2170359 | p.Gln85Arg | missense_variant | 0.33 |
PPE35 | 2170363 | p.Glu84Gln | missense_variant | 0.33 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726265 | p.Lys25Gln | missense_variant | 0.29 |
folC | 2746995 | p.Val202Ile | missense_variant | 1.0 |
pepQ | 2860338 | c.81G>A | synonymous_variant | 0.25 |
ald | 3087095 | p.Phe92Leu | missense_variant | 0.17 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878207 | p.Gly101Cys | missense_variant | 0.25 |
rpoA | 3878366 | p.Gly48* | stop_gained | 0.22 |
clpC1 | 4040594 | c.110delT | frameshift_variant | 0.22 |
clpC1 | 4040623 | p.Ile28Phe | missense_variant | 0.25 |
clpC1 | 4040633 | c.72C>T | synonymous_variant | 0.2 |
embC | 4239973 | c.111T>G | synonymous_variant | 0.5 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4326721 | p.Ser251Arg | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |