TB-Profiler result

Run: SRR3675570
Summary

Run ID: SRR3675570

Sample name:

Date: 04-04-2023 05:34:08

Number of reads: 1204

Percentage reads mapped: 23.69

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7670 c.369A>G synonymous_variant 1.0
gyrA 7676 c.375G>C synonymous_variant 1.0
gyrA 7683 c.382A>C synonymous_variant 1.0
gyrA 7694 c.393A>G synonymous_variant 1.0
gyrA 7697 c.396C>G synonymous_variant 1.0
gyrA 7710 c.409T>C synonymous_variant 1.0
gyrA 7715 c.414G>C synonymous_variant 1.0
gyrA 7728 c.427_429delAGGinsCGC synonymous_variant 1.0
gyrA 7760 c.459C>T synonymous_variant 1.0
gyrA 7763 c.462T>C synonymous_variant 1.0
gyrA 7799 c.498A>G synonymous_variant 1.0
rpoB 760946 c.1140A>G synonymous_variant 1.0
rpoB 762083 c.2277T>C synonymous_variant 1.0
rpoB 762086 c.2280G>C synonymous_variant 1.0
rpoB 762101 c.2295C>G synonymous_variant 1.0
rpoB 762114 p.Ile770Val missense_variant 1.0
rpoB 762131 c.2325C>G synonymous_variant 1.0
rpoB 762140 c.2334G>C synonymous_variant 1.0
rpoB 762143 c.2337T>C synonymous_variant 1.0
rpoB 762149 c.2343G>C synonymous_variant 1.0
rpoB 762167 c.2361T>C synonymous_variant 1.0
rpoB 762176 c.2370T>C synonymous_variant 1.0
rpoB 762185 c.2379G>C synonymous_variant 1.0
rpoB 762218 c.2412T>G synonymous_variant 1.0
rpsL 781793 c.234G>C synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 1.0
rpsL 781841 c.282C>G synonymous_variant 1.0
rpsL 781859 c.300T>C synonymous_variant 1.0
rpsL 781868 c.309T>C synonymous_variant 1.0
rpsL 781871 c.312G>C synonymous_variant 1.0
rpsL 781892 c.333A>G synonymous_variant 1.0
rpsL 781898 c.339A>T synonymous_variant 1.0
rpsL 781916 c.357T>C synonymous_variant 1.0
rpsL 781929 p.Gly124Ser missense_variant 1.0
thyX 3067682 c.264G>C synonymous_variant 1.0
thyX 3067685 c.261A>G synonymous_variant 1.0
thyX 3067688 c.258G>C synonymous_variant 1.0
thyX 3067694 c.252G>C synonymous_variant 1.0
thyX 3067718 c.228C>G synonymous_variant 1.0
thyX 3067721 c.225T>C synonymous_variant 1.0
thyX 3067724 c.222G>A synonymous_variant 1.0
thyX 3067727 c.219A>C synonymous_variant 1.0
thyX 3067739 c.207T>C synonymous_variant 1.0
thyX 3067742 c.204A>C synonymous_variant 1.0
rpoA 3878055 c.453A>G synonymous_variant 1.0
rpoA 3878061 c.447G>C synonymous_variant 1.0
rpoA 3878067 c.441C>G synonymous_variant 1.0
rpoA 3878070 c.438T>C synonymous_variant 1.0
rpoA 3878082 c.426T>C synonymous_variant 1.0
rpoA 3878094 c.414C>G synonymous_variant 1.0
rpoA 3878100 c.408C>G synonymous_variant 1.0
rpoA 3878103 c.405A>G synonymous_variant 1.0
rpoA 3878106 c.402G>C synonymous_variant 1.0
rpoA 3878118 c.390T>C synonymous_variant 1.0
rpoA 3878141 p.Met123Leu missense_variant 1.0
rpoA 3878142 p.Gly122Glu missense_variant 1.0
rpoA 3878271 c.237T>C synonymous_variant 1.0
rpoA 3878284 p.Glu75Ala missense_variant 1.0
rpoA 3878292 c.216T>C synonymous_variant 1.0
rpoA 3878298 c.210A>G synonymous_variant 1.0
rpoA 3878304 c.204G>C synonymous_variant 1.0