TB-Profiler result

Run: SRR3732689
Summary

Run ID: SRR3732689

Sample name:

Date: 04-04-2023 05:37:33

Number of reads: 64433

Percentage reads mapped: 98.14

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9650 c.2349G>A synonymous_variant 1.0
rpoC 766561 c.3192C>A synonymous_variant 1.0
inhA 1674242 p.Gly14Val missense_variant 0.5
katG 2156196 c.-85C>T upstream_gene_variant 1.0
Rv1979c 2223344 c.-180A>C upstream_gene_variant 1.0
folC 2747236 c.363G>A synonymous_variant 1.0
pepQ 2859887 p.Ala178Ser missense_variant 1.0
fbiB 3642555 p.Leu341Ile missense_variant 1.0
alr 3840637 p.Pro262Thr missense_variant 1.0
whiB6 4338595 c.-75delG upstream_gene_variant 1.0