Run ID: SRR5013534
Sample name:
Date: 2024-04-14T03:42:54.232198
Number of reads: 1495117
Percentage reads mapped: 55.18
Median coverage: 0.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
pncA | 2288682 | c.560G>A | splice_region_variant&stop_retained_variant | 0.99 | pyrazinamide | Not assoc w R - Interim |
pncA | 2289242 | c.-1T>C | upstream_gene_variant | 0.99 | pyrazinamide | |
pncA | 2289245 | c.-4A>C | upstream_gene_variant | 0.99 | pyrazinamide |