TB-Profiler result

Run: SRR5341208

Summary

Run ID: SRR5341208

Sample name:

Date: 04-04-2023 10:06:39

Number of reads: 30300

Percentage reads mapped: 99.5

Strain: lineage4.9

Drug-resistance: Sensitive


Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 0.99
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 762816 p.Leu1004Ile missense_variant 1.0
rpoC 764666 p.Gly433Ser missense_variant 1.0
mmpS5 778752 p.Asp52Tyr missense_variant 1.0
fbiC 1304763 c.1833C>A synonymous_variant 1.0
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
Rv1258c 1407443 c.-103C>A upstream_gene_variant 1.0
rrl 1474778 n.1121C>A non_coding_transcript_exon_variant 0.4
pepQ 2860337 p.Ile28Leu missense_variant 0.67
embC 4241506 c.1644G>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
whiB6 4338333 c.188dupC frameshift_variant 1.0