TB-Profiler result

Run: SRR5485398
Summary

Run ID: SRR5485398

Sample name:

Date: 18-08-2022 08:34:40

Number of reads: 146833

Percentage reads mapped: 99.09

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289114 p.His43Pro missense_variant 0.19 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6631 c.-671C>T upstream_gene_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.39
rrs 1472784 n.939A>G non_coding_transcript_exon_variant 0.2
rrs 1472795 n.950T>G non_coding_transcript_exon_variant 0.2
pncA 2288926 p.Phe106Val missense_variant 0.19
pncA 2289318 c.-77G>A upstream_gene_variant 0.17