TB-Profiler result

Run: SRR5485399
Summary

Run ID: SRR5485399

Sample name:

Date: 18-08-2022 08:34:26

Number of reads: 128589

Percentage reads mapped: 99.38

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
rrs 1472694 n.849C>T non_coding_transcript_exon_variant 0.12
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289151 p.Ile31Leu missense_variant 0.17
pncA 2289264 c.-23T>C upstream_gene_variant 0.15