TB-Profiler result

Run: SRR5485401
Summary

Run ID: SRR5485401

Sample name:

Date: 18-08-2022 08:28:23

Number of reads: 103228

Percentage reads mapped: 99.31

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2289114 p.His43Pro missense_variant 0.2 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 6722 c.-580C>A upstream_gene_variant 0.18
gyrB 6753 p.Ile505Ser missense_variant 0.18
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
katG 2155338 p.Asn258Lys missense_variant 0.18
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289055 p.Asp63Tyr missense_variant 0.2
pncA 2289100 p.Lys48Gln missense_variant 0.2