TB-Profiler result

Run: SRR5485406
Summary

Run ID: SRR5485406

Sample name:

Date: 18-08-2022 08:28:04

Number of reads: 82605

Percentage reads mapped: 97.05

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.26
rrs 1472615 n.770C>A non_coding_transcript_exon_variant 0.14
katG 2155091 p.Trp341Gly missense_variant 0.2
pncA 2289047 c.195C>T synonymous_variant 1.0