TB-Profiler result

Run: SRR5485410
Summary

Run ID: SRR5485410

Sample name:

Date: 18-08-2022 08:28:04

Number of reads: 73687

Percentage reads mapped: 63.35

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
rrs 1472359 n.514A>C non_coding_transcript_exon_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761151 c.1345C>T synonymous_variant 0.14
rpoB 761168 c.1362C>T synonymous_variant 0.14
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.25
rrs 1472676 n.831C>T non_coding_transcript_exon_variant 0.14