TB-Profiler result

Run: SRR5485421
Summary

Run ID: SRR5485421

Sample name:

Date: 18-08-2022 08:35:35

Number of reads: 50713

Percentage reads mapped: 53.09

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6629 p.Gly464Ser missense_variant 0.14
rpsL 781661 p.Cys34Trp missense_variant 0.17
rrs 1472329 n.484A>C non_coding_transcript_exon_variant 0.18
rrs 1472386 n.541G>A non_coding_transcript_exon_variant 0.19
rrs 1472431 n.586G>T non_coding_transcript_exon_variant 0.14
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.33
rrs 1472532 n.687A>G non_coding_transcript_exon_variant 0.17
rrs 1472556 n.711C>T non_coding_transcript_exon_variant 0.17
rrs 1473211 n.1368delA non_coding_transcript_exon_variant 0.14