TB-Profiler result

Run: SRR5485424

Summary

Run ID: SRR5485424

Sample name:

Date: 18-08-2022 08:35:36

Number of reads: 110774

Percentage reads mapped: 99.36

Strain:

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrB 6738 p.Thr500Asn missense_variant 0.18 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rrs 1473247 n.1402C>T non_coding_transcript_exon_variant 0.19 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6729 p.Leu497Arg missense_variant 0.18
gyrB 6744 p.Val502Gly missense_variant 0.18
gyrA 6757 c.-545C>A upstream_gene_variant 0.27
rpoB 761081 c.1275C>T synonymous_variant 0.18
rpoB 761168 c.1362C>T synonymous_variant 0.18
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.14
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.33