Run ID: SRR5485424
Sample name:
Date: 18-08-2022 08:35:36
Number of reads: 110774
Percentage reads mapped: 99.36
Strain:
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrB | 6738 | p.Thr500Asn | missense_variant | 0.18 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rrs | 1473247 | n.1402C>T | non_coding_transcript_exon_variant | 0.19 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6729 | p.Leu497Arg | missense_variant | 0.18 |
gyrB | 6744 | p.Val502Gly | missense_variant | 0.18 |
gyrA | 6757 | c.-545C>A | upstream_gene_variant | 0.27 |
rpoB | 761081 | c.1275C>T | synonymous_variant | 0.18 |
rpoB | 761168 | c.1362C>T | synonymous_variant | 0.18 |
rrs | 1472302 | n.457G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.33 |