TB-Profiler result

Run: SRR5485425
Summary

Run ID: SRR5485425

Sample name:

Date: 18-08-2022 08:35:26

Number of reads: 107368

Percentage reads mapped: 98.93

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6501 p.Arg421Pro missense_variant 0.17
gyrB 6503 p.Lys422Gln missense_variant 0.15
rpoB 761188 p.Arg461His missense_variant 0.2
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.22
eis 2715269 p.Ala22Thr missense_variant 0.17