TB-Profiler result

Run: SRR5485426

Summary

Run ID: SRR5485426

Sample name:

Date: 18-08-2022 08:35:14

Number of reads: 116603

Percentage reads mapped: 99.28

Strain:

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpsL 781705 p.Leu49Pro missense_variant 0.14
rrs 1472301 n.456C>G non_coding_transcript_exon_variant 0.13
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.38
rrs 1472615 n.770C>A non_coding_transcript_exon_variant 0.14