TB-Profiler result

Run: SRR5485427
Summary

Run ID: SRR5485427

Sample name:

Date: 18-08-2022 08:35:14

Number of reads: 101658

Percentage reads mapped: 98.87

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6729 p.Leu497Arg missense_variant 0.2
gyrB 6746 p.Gln503Lys missense_variant 0.2
gyrB 6750 p.Ala504Glu missense_variant 0.2
gyrB 6753 p.Ile505Ser missense_variant 0.2
gyrA 6757 c.-545C>A upstream_gene_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.32
rrs 1472671 n.826G>A non_coding_transcript_exon_variant 0.15
rrs 1472720 n.875C>T non_coding_transcript_exon_variant 0.15