TB-Profiler result

Run: SRR5485430
Summary

Run ID: SRR5485430

Sample name:

Date: 18-08-2022 08:34:52

Number of reads: 116301

Percentage reads mapped: 99.31

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpoB 761129 c.1323G>T synonymous_variant 0.18
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.26
rrs 1472696 n.851G>A non_coding_transcript_exon_variant 0.14
rrs 1473202 n.1357C>A non_coding_transcript_exon_variant 0.15
rrs 1473269 n.1424C>T non_coding_transcript_exon_variant 0.17