TB-Profiler result

Run: SRR5485432
Summary

Run ID: SRR5485432

Sample name:

Date: 18-08-2022 08:34:40

Number of reads: 106733

Percentage reads mapped: 97.49

Strain:

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6746 p.Gln503Lys missense_variant 0.25
rpoB 761147 c.1341C>A synonymous_variant 0.18
rpoB 761149 p.Arg448Leu missense_variant 0.18
rpoB 761189 c.1383T>G synonymous_variant 0.18
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.27
eis 2715272 p.Ala21Thr missense_variant 0.17
embB 4247485 c.972C>T synonymous_variant 0.2