TB-Profiler result

Run: SRR5485433
Summary

Run ID: SRR5485433

Sample name:

Date: 18-08-2022 08:32:51

Number of reads: 66395

Percentage reads mapped: 82.44

Strain:

Drug-resistance: RR-TB

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761139 p.His445Tyr missense_variant 0.59 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6632 p.Gly465Ser missense_variant 0.18
rrs 1472311 n.468delG non_coding_transcript_exon_variant 0.14
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.27
embB 4247478 p.Trp322* stop_gained 0.17
embB 4247491 c.978G>A synonymous_variant 0.17