TB-Profiler result

Run: SRR5485437
Summary

Run ID: SRR5485437

Sample name:

Date: 18-08-2022 08:32:25

Number of reads: 71379

Percentage reads mapped: 92.87

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781687 p.Lys43Arg missense_variant 0.95 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rpsL 781661 p.Cys34Trp missense_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
rrs 1472673 n.828T>C non_coding_transcript_exon_variant 0.13
rrs 1472674 n.829T>C non_coding_transcript_exon_variant 0.13
rrs 1472694 n.849C>T non_coding_transcript_exon_variant 0.13
eis 2715255 c.78T>C synonymous_variant 0.18