TB-Profiler result

Run: SRR5485456

Summary

Run ID: SRR5485456

Sample name:

Date: 18-08-2022 08:30:49

Number of reads: 179267

Percentage reads mapped: 91.81

Strain:

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781687 p.Lys43Arg missense_variant 0.89 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6746 p.Gln503Lys missense_variant 0.17
pncA 2288897 c.345A>C synonymous_variant 0.2
embB 4247640 p.Ala376Val missense_variant 0.18