TB-Profiler result

Run: SRR5485460

Summary

Run ID: SRR5485460

Sample name:

Date: 18-08-2022 08:30:26

Number of reads: 81975

Percentage reads mapped: 81.57

Strain:

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247579 p.Ala356Ser missense_variant 0.18 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6540 p.Asp434Ala missense_variant 0.17
gyrB 6616 p.Glu459Asp missense_variant 0.13
gyrB 6633 p.Gly465Val missense_variant 0.13
gyrB 6746 p.Gln503Lys missense_variant 0.18
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.25