TB-Profiler result

Run: SRR5485468
Summary

Run ID: SRR5485468

Sample name:

Date: 18-08-2022 08:30:07

Number of reads: 121834

Percentage reads mapped: 98.85

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761139 p.His445Asp missense_variant 1.0 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.26
rrs 1472652 n.807A>C non_coding_transcript_exon_variant 0.23
rrs 1473215 n.1370A>G non_coding_transcript_exon_variant 0.18
rrs 1473255 n.1410A>T non_coding_transcript_exon_variant 0.18
pncA 2288916 p.Val109Gly missense_variant 0.25
pncA 2288924 p.Phe106Val missense_variant 0.25
embB 4247529 p.Leu339Arg missense_variant 0.17