Run ID: SRR5485469
Sample name:
Date: 18-08-2022 08:30:07
Number of reads: 125790
Percentage reads mapped: 99.11
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761139 | p.His445Asp | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289114 | p.His43Pro | missense_variant | 0.2 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7625 | c.324G>A | synonymous_variant | 0.17 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.39 |
embB | 4247468 | p.Tyr319His | missense_variant | 0.2 |
embB | 4247484 | p.Gly324Ala | missense_variant | 0.14 |