TB-Profiler result

Run: SRR5485477
Summary

Run ID: SRR5485477

Sample name:

Date: 18-08-2022 08:29:25

Number of reads: 33290

Percentage reads mapped: 78.72

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781687 p.Lys43Arg missense_variant 1.0 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472363 n.518G>A non_coding_transcript_exon_variant 0.15
rrs 1472424 n.579G>A non_coding_transcript_exon_variant 0.15
rrs 1472426 n.581T>C non_coding_transcript_exon_variant 0.15
rrs 1472454 n.609C>G non_coding_transcript_exon_variant 0.15
rrs 1472466 n.621C>T non_coding_transcript_exon_variant 0.12
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.21