TB-Profiler result

Run: SRR5485478
Summary

Run ID: SRR5485478

Sample name:

Date: 18-08-2022 08:29:25

Number of reads: 31212

Percentage reads mapped: 74.22

Strain:

Drug-resistance: Sensitive

Download CSV Download TXT Download PDF Download JSON
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472356 n.511A>G non_coding_transcript_exon_variant 0.12
rrs 1472382 n.537G>A non_coding_transcript_exon_variant 0.12
rrs 1472431 n.586G>A non_coding_transcript_exon_variant 0.19
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.24
rrs 1472525 n.680C>T non_coding_transcript_exon_variant 0.15
rrl 1473413 n.-244delG upstream_gene_variant 0.12
rrl 1473501 n.-157C>A upstream_gene_variant 0.2