TB-Profiler result

Run: SRR5485479
Summary

Run ID: SRR5485479

Sample name:

Date: 18-08-2022 08:29:26

Number of reads: 54182

Percentage reads mapped: 75.56

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6644 p.Ser469Gly missense_variant 0.12
rrs 1472392 n.547C>T non_coding_transcript_exon_variant 0.13
rrs 1472430 n.585C>T non_coding_transcript_exon_variant 0.13
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.26
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.13
rrs 1472576 n.731T>C non_coding_transcript_exon_variant 0.13
rrs 1473370 n.1525T>G non_coding_transcript_exon_variant 0.15
rrl 1473441 n.-217T>C upstream_gene_variant 0.15