TB-Profiler result

Run: SRR5485480

Summary

Run ID: SRR5485480

Sample name:

Date: 18-08-2022 08:29:05

Number of reads: 35877

Percentage reads mapped: 84.07

Strain:

Drug-resistance: Other


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
embB 4247730 p.Gly406Asp missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472393 n.548G>A non_coding_transcript_exon_variant 0.17
rrs 1472401 n.556T>C non_coding_transcript_exon_variant 0.17
rrs 1472408 n.563A>G non_coding_transcript_exon_variant 0.18
rrs 1472431 n.586G>T non_coding_transcript_exon_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.24
rrs 1472496 n.651T>C non_coding_transcript_exon_variant 0.15
rrs 1472518 n.673G>T non_coding_transcript_exon_variant 0.15
rrs 1472561 n.716G>A non_coding_transcript_exon_variant 0.15
rrs 1473375 n.1530T>C non_coding_transcript_exon_variant 0.15
rrl 1473429 n.-229G>A upstream_gene_variant 0.15