TB-Profiler result

Run: SRR5485488
Summary

Run ID: SRR5485488

Sample name:

Date: 18-08-2022 08:28:44

Number of reads: 106520

Percentage reads mapped: 80.52

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpsL 781687 p.Lys43Arg missense_variant 0.97 streptomycin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6501 p.Arg421Pro missense_variant 0.15
rrs 1472454 n.609C>G non_coding_transcript_exon_variant 0.14
rrs 1473308 n.1463G>A non_coding_transcript_exon_variant 0.18