TB-Profiler result

Run: SRR5485493
Summary

Run ID: SRR5485493

Sample name:

Date: 18-08-2022 08:37:05

Number of reads: 330861

Percentage reads mapped: 99.68

Strain:

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
pncA 2288718 p.Met175Arg missense_variant 0.14 pyrazinamide
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7529 c.228G>C synonymous_variant 0.2
gyrA 7585 p.Ser95Thr missense_variant 1.0
rpoB 761228 p.Tyr474* stop_gained 0.18
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.31
rrs 1473200 n.1355A>C non_coding_transcript_exon_variant 0.17
rrs 1473278 n.1433T>A non_coding_transcript_exon_variant 0.16
fabG1 1673485 p.Arg16Ser missense_variant 0.36