TB-Profiler result

Run: SRR5485495
Summary

Run ID: SRR5485495

Sample name:

Date: 18-08-2022 08:37:06

Number of reads: 359880

Percentage reads mapped: 99.66

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6645 p.Ser469Asn missense_variant 0.2
gyrA 7529 c.228G>C synonymous_variant 0.18
gyrA 7585 p.Ser95Thr missense_variant 1.0
rpoB 761059 p.Val418Gly missense_variant 0.15
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.28
fabG1 1673485 p.Arg16Ser missense_variant 0.25
embB 4247684 p.Leu391Met missense_variant 0.17
embB 4247796 p.Leu428Arg missense_variant 0.2