TB-Profiler result

Run: SRR5485501
Summary

Run ID: SRR5485501

Sample name:

Date: 18-08-2022 08:36:28

Number of reads: 135658

Percentage reads mapped: 96.79

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6501 p.Arg421Pro missense_variant 0.23
rpoB 761228 p.Tyr474* stop_gained 0.17
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.41
rrs 1473216 n.1371C>T non_coding_transcript_exon_variant 0.14
rrs 1473260 n.1415G>A non_coding_transcript_exon_variant 0.14
fabG1 1673388 c.-52T>C upstream_gene_variant 0.14
fabG1 1673400 c.-40C>T upstream_gene_variant 0.14
katG 2155108 p.Ile335Ser missense_variant 0.15
eis 2715260 p.Thr25Pro missense_variant 0.18
eis 2715280 p.Leu18Pro missense_variant 0.2