Run ID: SRR5485507
Sample name:
Date: 18-08-2022 08:34:05
Number of reads: 436404
Percentage reads mapped: 99.76
Strain:
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rpsL | 781687 | p.Lys43Arg | missense_variant | 1.0 | streptomycin |
rrs | 1473246 | n.1401A>G | non_coding_transcript_exon_variant | 1.0 | kanamycin, capreomycin, aminoglycosides, amikacin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289188 | c.53dupC | frameshift_variant | 1.0 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
rrs | 1472493 | n.648T>G | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473200 | n.1355A>C | non_coding_transcript_exon_variant | 0.17 |
fabG1 | 1673485 | p.Arg16Ser | missense_variant | 0.38 |
fabG1 | 1673500 | c.63delC | frameshift_variant | 0.17 |
pncA | 2289254 | c.-13G>T | upstream_gene_variant | 1.0 |
eis | 2715133 | p.Leu67Arg | missense_variant | 1.0 |