TB-Profiler result

Run: SRR5485532

Summary

Run ID: SRR5485532

Sample name:

Date: 18-08-2022 08:34:18

Number of reads: 104203

Percentage reads mapped: 99.18

Strain:

Drug-resistance: Sensitive


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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7625 c.324G>A synonymous_variant 0.18
gyrA 7627 p.Leu109Arg missense_variant 0.18
gyrA 7673 c.372G>T synonymous_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
rrs 1472652 n.807A>C non_coding_transcript_exon_variant 0.18
rrs 1473243 n.1398G>A non_coding_transcript_exon_variant 0.15
rrs 1473260 n.1415G>A non_coding_transcript_exon_variant 0.15
pncA 2289052 p.Tyr64His missense_variant 0.13
embB 4247350 c.837C>T synonymous_variant 0.18