TB-Profiler result

Run: SRR5485533
Summary

Run ID: SRR5485533

Sample name:

Date: 18-08-2022 08:34:17

Number of reads: 93285

Percentage reads mapped: 97.71

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6630 p.Gly464Asp missense_variant 0.17
gyrA 6640 c.-662A>G upstream_gene_variant 0.17
gyrA 7589 c.288G>A synonymous_variant 0.14
gyrA 7629 p.Val110Leu missense_variant 0.14
rpoB 761228 p.Tyr474* stop_gained 0.18
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.17
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
rrs 1472704 n.859C>T non_coding_transcript_exon_variant 0.17
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.17
pncA 2289264 c.-23T>C upstream_gene_variant 0.18
embB 4247448 p.His312Pro missense_variant 0.14