TB-Profiler result

Run: SRR5485534
Summary

Run ID: SRR5485534

Sample name:

Date: 18-08-2022 08:34:17

Number of reads: 91511

Percentage reads mapped: 98.91

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7604 c.303G>A synonymous_variant 0.2
gyrA 7666 p.Asp122Gly missense_variant 0.2
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.25
rrs 1473264 n.1419A>G non_coding_transcript_exon_variant 0.15
rrs 1473303 n.1458T>C non_coding_transcript_exon_variant 0.15
rrs 1473370 n.1525T>C non_coding_transcript_exon_variant 0.14
pncA 2289047 c.195C>T synonymous_variant 1.0
eis 2715268 p.Ala22Val missense_variant 0.13
embB 4247529 p.Leu339Arg missense_variant 0.15