TB-Profiler result

Run: SRR5485535
Summary

Run ID: SRR5485535

Sample name:

Date: 18-08-2022 08:33:52

Number of reads: 84877

Percentage reads mapped: 99.24

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7634 c.333C>T synonymous_variant 0.17
rpoB 761228 p.Tyr474* stop_gained 0.2
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.18
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.28
rrs 1472643 n.798A>G non_coding_transcript_exon_variant 0.13
rrs 1473264 n.1419A>G non_coding_transcript_exon_variant 0.17
rrl 1473412 n.-245delG upstream_gene_variant 0.13