TB-Profiler result

Run: SRR5485536
Summary

Run ID: SRR5485536

Sample name:

Date: 18-08-2022 08:33:55

Number of reads: 162487

Percentage reads mapped: 99.29

Strain:

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6503 p.Lys422Gln missense_variant 0.18
gyrB 6540 p.Asp434Ala missense_variant 0.17
gyrB 6726 p.Val496Gly missense_variant 0.14
gyrB 6744 p.Val502Gly missense_variant 0.14
gyrB 6746 p.Gln503Lys missense_variant 0.14
gyrB 6750 p.Ala504Glu missense_variant 0.14
gyrA 6757 c.-545C>A upstream_gene_variant 0.17
rrs 1472301 n.456C>G non_coding_transcript_exon_variant 0.18
rrs 1472302 n.457G>C non_coding_transcript_exon_variant 0.15
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289052 p.Tyr64His missense_variant 0.18