TB-Profiler result

Run: SRR5485556
Summary

Run ID: SRR5485556

Sample name:

Date: 18-08-2022 08:26:39

Number of reads: 118790

Percentage reads mapped: 99.32

Strain:

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761155 p.Ser450Leu missense_variant 1.0 rifampicin
embB 4247431 p.Met306Ile missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
rrs 1472493 n.648T>G non_coding_transcript_exon_variant 0.3
rrs 1472652 n.807A>C non_coding_transcript_exon_variant 0.18
rrl 1473503 n.-154delA upstream_gene_variant 0.2
embB 4247348 p.Thr279Pro missense_variant 0.2